Welcome to the Amira-Avizo Software Use Case Gallery

Below you will find a collection of use cases of our 3D data visualization and analysis software. These use cases include scientific publications, articles, papers, posters, presentations or even videos that show how Amira-Avizo Software is used to address various scientific and industrial research topics.

Use the Domain selector to filter by main application area, and use the Search box to enter keywords related to specific topics you are interested in.

High performance anode with dendritic porous structure for low temperature solid oxide fuel cells

High performance anode with dendritic porous structure for low temperature solid oxide fuel cells

A dendritic porous supported microstructure simultaneously creates small pore size and broad gas diffusion pathways in a solid oxide fuel cell anode membrane. This microstructure also achieves pore sizes that reduce with increasing depth within the membrane without increasing the structure tortuosity. Such a microstructure supplies high triple phase boundary density, fast gas diffusion and low polarization resistance. Here we characterise the performance of a porous anode with such a dendriti... Read more

Xin Shao, William D.A. Rickard, Dehua Dong, Huu Dang , Martin Saunders, Aaron Dodd, Gordon Parkinson, Chun-Zhu Li

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Cryo-STEM mapping of solid–liquid interfaces and dendrites in lithium-metal batteries

Cryo-STEM mapping of solid–liquid interfaces and dendrites in lithium-metal batteries

Solid–liquid interfaces are important in a range of chemical, physical and biological processes but are often not fully understood owing to the lack of high-resolution characterization methods that are compatible with both solid and liquid components. For example, the related processes of dendritic deposition of lithium metal and the formation of solid–electrolyte interphase layers are known to be key determinants of battery safety and performance in high-energy-density lithium-metal bat... Read more

Michael J. Zachman, Zhengyuan Tu, Snehashis Choudhury, Lynden A. Archer & Lena F. Kourkoutis

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Operando Visualization and Multi-scale Tomography Studies of Dendrite Formation and Dissolution in Zinc Batteries

Operando Visualization and Multi-scale Tomography Studies of Dendrite Formation and Dissolution in Zinc Batteries

Alternative battery technologies are required to meet growing energy demands and address the limitations of present technologies. As such, it is necessary to look beyond lithium-ion batteries. Zinc batteries enable high power density while being sourced from ubiquitous and cost-effective materials. This paper presents, for the first time known to the authors, multi-length scale tomography studies of failure mechanisms in zinc batteries with and without commercial microporous separators. In bo... Read more

Vladimir Yufit, Farid Tariq David S. Eastwood Moshiel Biton Billy Wu Peter D. Lee Nigel P. Brandon

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In situ x-ray computed tomography of zinc–air primary cells during discharge: correlating discharge rate to anode morphology

In situ x-ray computed tomography of zinc–air primary cells during discharge: correlating discharge rate to anode morphology

Given the urgent need to move to low-carbon technologies, batteries are being increasingly used in a range of applications. Lithium-ion batteries are the most widely used chemistry, but to meet the growing demand, there is a need to move beyond lithium towards alternative battery chemistries. Metal–air batteries are a group of such battery alternatives that hold promise, especially for stationary power and flexible electronics applications.

However, barriers to their widespread adopt... Read more

Jennifer Hack, Drasti Patel, Josh J Bailey, Francesco Iacoviello, Paul R Shearing, and Dan J L Brett

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Full reconstruction of large lobula plate tangential cells in Drosophila from a 3D EM dataset

Full reconstruction of large lobula plate tangential cells in Drosophila from a 3D EM dataset

With the advent of neurogenetic methods, the neural basis of behavior is presently being analyzed in more and more detail. This is particularly true for visually driven behavior of Drosophila melanogaster where cell-specific driver lines exist that, depending on the combination with appropriate effector genes, allow for targeted recording, silencing and optogenetic stimulation of individual cell-types. Together with detailed connectomic data of large parts of the fly optic lobe, this has rece... Read more

Kevin M. Boergens , Christoph Kapfer, Moritz Helmstaedter, Winfried Denk, Alexander Borst

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Cell-type specific innervation of cortical pyramidal cells at their apical tufts

Cell-type specific innervation of cortical pyramidal cells at their apical tufts

We investigated the synaptic innervation of apical tufts of cortical pyramidal cells in a region between layers 1 and 2 using 3-D electron microscopy (3D-EM) applied to four cortical regions in mouse. Across all cortices, we found the relative inhibitory input at the apical dendrite’s main bifurcation to be more than 3-fold stronger for layer 2 pyramidal cells than for all other pyramidal cells. Towards the distal tuft dendrites in upper layer 1, however, the relative inhibitory input was a... Read more

Ali Karimi, Jan Odenthal, Florian Drawitsch, Kevin M. Boergens, Moritz Helmstaedter

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3D characterization of ultrasonic melt processing on the microstructural refinement of Al-Cu alloys by synchrotron X-ray tomography

3D characterization of ultrasonic melt processing on the microstructural refinement of Al-Cu alloys by synchrotron X-ray tomography

The effect of ultrasonic melting processing on three-dimensional architecture of intermetallic phases and pores in two multicomponent cast Al-5.0Cu 0.6Mn-0.5 Fe alloys is characterized using conventional microscopy and synchrotron X-ray microtomography. (…) The results show that ultrasonic melt processing (USP) significantly reduce the volume fraction, grain size, interconnectivity, and equivalent diameter of the intermetallic phases in both alloys. The volume fraction of pores in both ... Read more

Yuliang Zhao, Dongfu Song, Bo Lin, Chun Zhang, Donghai Zheng, Zhi Wang, Weiwen Zhang

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Three-dimensional virtual histology of human cerebellum by X-ray phase-contrast tomography

Three-dimensional virtual histology of human cerebellum by X-ray phase-contrast tomography

To quantitatively evaluate brain tissue and its corresponding function, knowledge of the 3D cellular distribution is essential. The gold standard to obtain this information is histology, a destructive and labor-intensive technique where the specimen is sliced and examined under a light microscope, providing 3D information at nonisotropic resolution. To overcome the limitations of conventional histology, we use phase-contrast X-ray tomography with optimized optics, reconstruction, and image an... Read more

Mareike Töpperwien, Franziska van der Meer, Christine Stadelmann, and Tim Salditt

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